PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32999
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 303aa    MW: 32476 Da    PI: 11.1937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32999genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.51.2e-31191541128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk.atgkdkevlsk... 95 
               lppGfrF+Ptdeelvv+yL++k+ + +l++  vi++v ++y+++Pwd+p    a+e e y+F+ r  + a  kr  r +t+sg Wk a+ ++++v+++   
  EMT32999  19 LPPGFRFRPTDEELVVQYLRRKALALPLPA-AVISDVhNLYSLDPWDIP---GAREGEKYYFAVRPAAGA--KRGGRtTTASGCWKpASARERPVVVSrcg 113
               79****************************.89999999**********...345678999999988765..577775788*****777789999998898 PP

       NAM  96 kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
               +++lvg+kk+L+f         ++  p + +t Wvmheyrl
  EMT32999 114 RSHLVGVKKSLAFVprrgkgkgSKAPPASAQTGWVMHEYRL 154
               8999**********9988664434566778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-3817182IPR003441NAC domain
PROSITE profilePS5100541.36419182IPR003441NAC domain
PfamPF023659.9E-2120154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MERTPVMVRQ GGQEVLRQLP PGFRFRPTDE ELVVQYLRRK ALALPLPAAV ISDVHNLYSL  60
DPWDIPGARE GEKYYFAVRP AAGAKRGGRT TTASGCWKPA SARERPVVVS RCGRSHLVGV  120
KKSLAFVPRR GKGKGSKAPP ASAQTGWVMH EYRLALPHHH KNGCCLAEAG TEEWVVCRIF  180
QRDRSSSSSN RQTPGIQGTD AHHTMPPSPS SSSSSSCVTS GGGSPDMQEE CRPPRGRHGM  240
SQLPPSPPPA LTSPSAAAGD RRQGKPTRVM VAAEGISSLP RIRGVRPSRL RGGGGLAVVH  300
VGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B5e-251918617169NAC domain-containing protein 19
4dul_A5e-251918617169NAC domain-containing protein 19
1ut7_B5e-251918617169NO APICAL MERISTEM PROTEIN
1ut7_A5e-251918617169NO APICAL MERISTEM PROTEIN
1ut4_B5e-251918617169NO APICAL MERISTEM PROTEIN
1ut4_A5e-251918617169NO APICAL MERISTEM PROTEIN
3swp_D7e-251918620172NAC domain-containing protein 19
3swp_C7e-251918620172NAC domain-containing protein 19
3swp_B7e-251918620172NAC domain-containing protein 19
3swp_A7e-251918620172NAC domain-containing protein 19
3swm_D7e-251918620172NAC domain-containing protein 19
3swm_C7e-251918620172NAC domain-containing protein 19
3swm_B7e-251918620172NAC domain-containing protein 19
3swm_A7e-251918620172NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659635.18e-75PREDICTED: NAC domain-containing protein 83-like
TrEMBLM8CEY40.0M8CEY4_AEGTA; NAC domain-containing protein 18
STRINGMLOC_67296.11e-134(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-30NAC domain containing protein 83